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SARS
What We Know, What We Don't
Created 4/22/2003 - Updated 5/27/2003 

A new disease that originated in China is spreading around the world. What are the risks to your health? How can you stay safe? Is this human disease the result of eating animals that many would consider pets or zoo specimines? Did SARS come from outer space?

"If SARS maintains its present pathogenicity and transmissibility, it could become the first severe new disease of the 21st century with global epidemic potential." - David Heymann, head of infectious diseases at the World Health Organization

electron micrograph of SARS virus?
from micro.msb.le.ac.uk

 

First Case

The first reported case was November 16, 2002 in the industrial town of Foshan. 5 A 48-year-old Chinese man made seven international flights (visiting London England, Barcelona Spain, and Frankfurt Germany ) before he was admitted to the Hong Kong hospital. He survived but his identity remains anonymous.

On February 22, 2003, the initial Hong Kong patient, a medical professor from the Sun-Yat-sen University (Pr JL L, of ZhongShan Da Xue) in the Guangdong province was admitted in serious condition to Kwong Wah hospital. He warned the staff attending him that he had caught an extremely contagious disease while attending patients at the hospital where he worked. 4

Others report that the first hospitalized case of Severe Acute Respiratory Syndrome (SARS), a fast-spreading and sometimes lethal viral infection was on March 7, 2003 near Guangzhou, southern China.

Symptoms
According to the CDC, SARS generally "begins with a fever greater than 100.4°F [>38.0°C]. Other symptoms may include headache, an overall feeling of discomfort, and body aches. Some people also experience mild respiratory symptoms. After 2 to 7 days, SARS patients may develop a dry cough and have trouble breathing."

Spread

As of April 22, 2003, SARS has already spread to the USA: See where.

Genetic Code

Sequencing is the process of determining the genetic code of an organism. The SARS virus was sequenced on April 16, 2003 by the Beijing Genomics Institute of the Chinese Academy of Sciences. Similar institutes in Canada and the US have also sequenced samples.

"On April 12, the 29,736-nucleotide genome sequence of the virus was completed by a team at the Michael Smith Genome Sciences Centre in Vancouver, which was not a formal member of the network. The US Centers for Disease Control (CDC), part of the network, followed two days later by publishing its own sequence, slightly shorter at 29,727 nucleotides but otherwise differing by only "about ten base-pairs, a trivial difference," according to Julie Gerberding, director of the CDC.)" (biomedcentral.com)

According to sequence matching database reports, SARS has bits and pieces of several coronaviruses (pig and mouse) but also sequences that do not match any known virus. See comparison. (from Rense.com)

RNA Virus

SARS is a single-stranded RNA virus like HIV.
Treatment
In the first cases, 95 per cent of SARS patients respond to a cocktail of anti-viral drug Ribavirin and steroids. Mutation, viral load or a second virus has resulted in less successful treatment and has stumped scientists. (straitstimes.asia1.com)

Rapid Mutation

The virus is mutating rapidly. "A few nucleotide differences among individual genomes were detected ... the virus is expected to mutate very fast and easily," said the Beijing Genomics Institute. (news.ft.com)

Bacteria Involved

Chinese scientists found that the bacteria chlamydia is one of the main pathogens consistently found in cases of Severe Acute Respiratory Syndrome (SARS) which first appeared. (news.com.au) Could it be that people in that area already had the chlamydia? SARS spreads via the air, but chlamydia is normally spread only by vaginal or anal intercourse or from a woman to her fetus during birth. The obscure and discarded theory of extreme pleomorphism says that bacteria and viruses are sometimes different stages of the same organism. With what we know today, this seems wrong, but ... does the SARS RNA sequence match the RNA or DNA of the coexisting chlamydia bacteria? Perhaps no one has checked because the idea is strange.

Airborne Chlamydia

Fox news reported that a rare form of airborne chlamydia may accompany the SARS virus. Chlamydia bacteria have a unique 48 hour developmental cycle. Two morphological forms are recognized, the smaller highly infective ELEMENTARY BODY, which is capable of extracellular survival, and the RETICULATE BODY, which is found intracellularly and is the replicating form. Both forms contain RNA and DNA. Chlamydia pneumoniae was discovered by Dr. J. Thomas Grayston, professor of epidemiology at the UW School of Public Health and Community Medicine in the mid-1980's. This form of Chlamydia floats around in the air and can infect the lungs.

Coronavirus

Coronaviruses were first isolated from chickens in 1937. 2 Coronavirus is a genus of pleomorphic viruses which look like coronas or halos when viewed with a microscope. It is the single genus of the family Coronaviridae.

Dr. David Heymann, executive director in charge of communicable diseases for the organization, said the agency was "99 percent sure" that severe acute respiratory syndrome was caused by the new coronavirus based on the monkey experiments that were conducted in the Netherlands. - 4/16/03 SF Gate

SARS is considered to be caused by a unique coronavirus due to its appearance (see electron micrograph at top of story) and sequence, yet it has unusual properties. Unlike most Coronaviruses, the SARS virus can be grown in Vero cells (a line of fibroblast cells first isolated in 1962 from a primate.) There are two strains (229E is an airborne variant & OC43) which grow in some Vero cell lines and they have been used as a model for studies.

The sequence of SARS indicates that the virus is only distantly related to known coronaviruses (identical in 50 to 60 percent of the nucleotide sequence). It does not fit into any of the three (four?) established coronavirus 'antigenic groups.' 3 Four antigenic groups which have been defined by host-range, immunofluorescence, seroneutralization, ELISA and immunoelectron microscopy. 4

Are we certain SARS is caused by this coronavirus? According to biomedcentral.com Frank Plummer's National Microbiology Laboratory using very sensitive PCR techniques only detected minute amounts of coronavirus in about half the cases of SARS and detected some virus in people without SARS. 5

SARS Origin

There are only a few possibilities.

1. The virus mutated from some known animal virus.

Scientists in China found evidence of the SARS virus in three species of mammals ( exotic animals ) "for sale at a food market in Shenzhen." ... "He Jianfan, director of microbiology at the Shenzhen Disease Prevention and Control Centre, said he believes the results indicate that the workers caught the virus from the animals, developed a mild form of the disease but then the virus mutated into a more virulent form before it was passed on to other humans." - news24

What animals were they eating? Himalayan palm civets, raccoon dogs ( Yes, they are really DOGS, not racoons. How about we stop killing dogs for fur as well as eating them?) and badgers. The human virus was found to be identical to SARS found in the ferret-like civet cats -- except for having a deletion of 29 fewer nucleotides in the N-protein. That's not much of a difference when you consider that the virus has around
29,727 nucleotides. Having a slightly larger virus in the civet suggests that the virus started there and then migrated to humans. It is still possible that humans or other mammals infected the civets.

The Beijing Times said that monkeys, snakes, and bats were targeted in Guangdong where the global Sars outbreak originated. Monkeys!? Are people in China really eating primates? I found this site: "Guangdong Dish: good at cooking snakes, racoon dogs and monkeys; the flavor is mainly light, crisp, tasty and fresh." The world is shrinking. As a result, people eating civet cats, dogs and monkeys on the other side of the world may indirectly result in the death of people you know. Interesting, isn't it?


2. It came from outer space (see our article on panspermia.)

We have strong evidence that the SARS virus crossed the species boundries between man and other mammals, but we still don't know much about the source of the virus. SARS may have come from space. Note: a month after this article was written CNN also came out with this idea.

3. It was man made.

Nikolai Filatov, Moscow's head of epidemiological services, told the Gazeta daily that he thought the pneumonia was man-made because "there is no vaccine for this virus, its make-up is unclear, it has not been very widespread and the population is not immune to it". The virus, according to Academy of Medicine member Sergei Kolesnikov, is a cocktail of mumps and measles, whose mix could never appear in nature. "We can only get that in a laboratory," he told a conference in the Siberian city of Irkutsk, quoted by RIA Novosti news agency. It may have spread because of an "accidental leak" from a lab, he said. (abc.net.au)

The above statement may be due to early reports from labs in Germany and Hong Kong of detection of paramyxoviruses which include respiratory syncytial virus and the viruses that cause measles and mumps. They are so common, however, it is possible that the detected particles were "background" viruses, and not the actual or single cause of SARS.

Projections

The following are one person's predictions for a possible spread of this disease. I think these are infections, not deaths.

low high date
3982 4269 April 30
7358 7887 May 31
12810 13732 June 28
24624 26396 July 31
45495 48769 August 31
82407 88338 September 30

Spreading Rumors Illegal in China

Chinese authorities arrested 13 people in Guangdong for spreading rumours about the Sars epidemic through text messages on mobile phones. Are all text messages are monitored in China? I guess they have to do something, but what a sick world (pardon the pun) where passing wrong information to your friends and family results in your arrest and detention! One person was fined 200 yuan (S$43) and detained for 15 days according to the Wen Wei Po daily.


Civil Liberties

Will our own public health authorities impose quarantines ( which are by definition deprivations of liberty ) like those in Beijing – with thousands of employees and patients forcibly restricted in hospitals? Even if you don't have SARS, will you be isolated in some holding area because the government claims you were exposed? Will police arrest people who refuse medical treatment as some fear in Australia? If you think it couldn't happen here read this: Bush Order Allows Quarantine of Sars Cases (Reuters, 4 APR 03). Also, you should really read about the MSEHPA.

 

 

 

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